I have successfully compiled all maps for the first time. Of course the md5sums didn't match.
Two requests:
Could you move
http://ufoai.org/maps/2.5/MAPS into your git repository, at least for the final release version?
What do you think about adding the commit string to the file, so that it is clear against which version the maps were compiled?
I'm struggling to see the problem:
For compiling the maps successfully only base/maps and base/textures are required, correct?
I use an intel based x86_64 linux system, your Makefile and commit: 480f1117edca8aea2dbc2073627c8af24ffe15fa from the 18th of August.
It took my core duo from 2009 10 hours to compile all maps.