If you want to get down to it, if you're an elite organization, would you only get the best of hte best? (think Delta Force, Rangers, Seals, Spetnatz, etc..)
Having you soldiers start with practicely every skill mediocre or average doe sound a bit daft, but it's fun.
It's fun to MOLD and IMPROVE soldiers. If they already are kick-ass super awesome...well, then there's no need for that, is there?
Speaking of which, it might be nice to get a few regular recruits and 1-2 really good ones (with better stats). that, or the abiltiy to create your own agent/avatar (ala JA2..IMP) OR redistribute the points.